I thought about that too. Only the 63-66 V-8 models used a CV type joint. All others (including 56-62 V-8s) used a single joint at the front. I thought driveshaft angle too, but nothing I do to that helps.
Did you check driveline angle longitudinally? My 63 Classic was wacked hard once (probably 20 yrs ago) and I had four wheel alignment checked; it's parallelagrammed about 1" end to end. Aligner said "its better than most new cars!", it tracks perfectly and tire wear is perfect.
But I found the driveline out of alignment. It was easy to check, reasonably easy to fix.
I ran a string taut from the harmonic balancer to the center of the rear axle, and put little wedges such that the string wasn't resting on anything. I found that the rear of the transmission/front of driveshaft wasout of line with the other two points; I re-drilled the crossmember to push the rear trans mount over into line.
Also, driveline angles are pretty tight, tolerances within a degree might be required, and you may have to determine what's proper since you have a non-stock rear. I wouldn't copy the torquetube angles, since it's such a wacky system, but instead copy a same-size later open-driveline car. Pinion angles are important.